IMonitor - analyze the sequence data of immune repertoire sequenced by NGS. If paired-end reads(FASTQ) as input, it will be merged to single sequence according to overlap region. FASTA sequence as input is acceptable. It provides re-alignment algorithm to identify accurately V,D,J alleles.Sequencing error … Zobacz więcej It runs on 64-bit Linux systems. for 1Gb raw data as input, about maximum 2Gb memory would be required. Perl and R need to be installed for you system Zobacz więcej !!!Note: for the usage of 1.4.5, please run "perl IMonitor.pl" to see the details!!! ###1. Create shell perl IMonitor.plCompulsory: for FASTQ … Zobacz więcej ###1. Directory ###2. file format 1. Result/*.structure.gz formatID fuction V_ref D_ref J_ref CDR3_start CDR3_end CDR3(dna) CDR3(aa) 3'V_del 5'D_del 3'D_del 5'J_del … Zobacz więcej WitrynaCreate and enforce custom rules for your GitHub repositories. Setup custom rules around pull requests, commits and committers for all your Github repositories. For …
IMonitor: A Robust Pipeline for TCR and BCR Repertoire Analysis
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